About Us
Learn what we are and what we wereWe may not be a team but something more
Research, especially theoretical research, is often a solitary process. Our lab offers a unique environment for discussion and communication to best support individual activities.
Teamwork is not a necessary outcome of working within a team environment, but is rather shaped only by the actions and interactions of the constituent individuals.
Our Members
Tetsuya J. Kobayashi
Professor
Quantitative biology. Applied Math.
Atsushi Kamimura
Project Assistant Professor
Biophysics. Origin of life.
Simon Schnyder
Project Assistant Professor
Multi-cellular Dynamics
Masanari Shimada
Project Assistant Professor
Glassy dynamics
Dimitri Loutchko
Project Researcher
Biochemistry & thermodynamics
Ignacio Madrid
Project Researcher
Branching process
Praful Gagrani
Project Researcher
CRN theory and its applications
So Nakashima
Visiting researcher
Applied Math. Population Dynamics.
Yotaro Katayama
Visiting researcher
Machine learning. Immuno-informatics.
Takehiro Tottori
Visiting researcher
Control theory
Shuhei Horiguchi
Visiting researcher
Learning of immune systems.
Kyohei Kinoshita
Doctor Student
Immunology
Masaki Kato
Doctor Student
Information processing by population
Keisuke Sugie
Doctor Student
Chemical reaction networks
Masamitsu Yasutake
Doctor Student
Deep Learning for Metagenome
Ryosuke Uemura
Master Student
Binding prediction by DL
Alice Masudome
Master Student
To be determined
Miho Aoki
Technical staff
Illustration.
Our Alumni & Alumnae
May the road rise up to meet you, May the wind be ever at your back.
May the sun shine warm upon your face, And the rain fall softly on your fields
And until we meet again, May God hold, you in the hollow of his hand.
From traditional Irish blessing
Machiko Katori
Doctor Student (2021/04~2025/03)
Epigenetic regulation of mutation
Tengjiao He
Master Student (2023/04~2025/03)
Multi-cellular simulation
Kento Imaizumi
Master Student (2023/04~2025/03)
Learning in olfactory perception
Zi Hui (Violet)
Master Student (2022/10~2024/09)
Bio- & Chemo-informatics
Paul François
Visiting researcher (2024/01~2024/06)
Theoretical q-biology
Yuma Tanimoto
Master Student (2022/04~2024/03)
Latent state inference
Yuki Sughiyama
Proj. Assist. Prof. (2014/04~2023/11)
Large Deviation. Population Dynamics
Chengkai Yang
Master Student (2021/10~2023/9)
Developmental trajectory inference
Naoto Yamaguchi
Master Student (2019/4~2023/8)
Bioinformatics
Kento Nakamura
Doctor Student (2018/4~2023/3)
Stochastic processes. Chemotaxis
Mengji Zhang
Visiting PhD student (2022/6~2023/1)
Chemoinformatics of olfaction.
Miyahara
Visitor, somehow (201?/?~2021/3)
Quantum machine learning.
Yuki Takakura
IIS Researcher (2020/4~2021/3)
Immunology. Thymopoiesis.
Yohei Saito
Researcher (2014/4~2021/3)
QFT.Theory for consciousness.
Keita Iida
Project Assistant Professor (2018/7~2019/3)
Stochastic Analysis, Math. Physics
Keisuke Ejima
JSPS Researcher (2015/4~2018/3)
Epidemiology. Obecity
Ryo Yokota
D+Posdoc (2009/4~2018/3)
T cell repertoire & data analysis.
Atsushi Kamimura
Posdoc (2010/4~2012/3)
Information in biological systems
Khayrul Bashar
Posdoc (2010/4~2014/3)
Bioimage informatics. Medical imaging.
Kazumasa Kaneko
M & D Student (2015/4~2020/3)
Modeling Thymic Homeostasis.
Takaaki Matsui
Master Student (2017/4~2019/3)
Mechanics of embryogenesis.
Keizaburo Nishikino
Master Student (2017/4~2019/3)
Nonlinear data analysis. Cell migration.
Kazuki Shibue
Master Student (2016/4~2018/9)
Bioimage informatics. Cell migration.
Takuya Kato
Master Student (2016/4~2018/3)
Learning thery for adaptive immune systems.
Shota Miki
Master Student (2014/4~2016/3)
Population dynamics with interactions.
Yuki Kaminaga
Master Student (2013/4~2015/3)
Immuno repertoire analysis.
Takuya Gaman
Master Student (2013/4~2015/3)
Epigenetic memory
Hiroyuki Imaizumi
Master Student (2012/4~2013/3)
Learning of adaptive immunity
Tomoyuki Yamada
Master Student (2010/4~2011/3)
Cellular decision making
Takahiro Kanazawa
Universality Biol. trainee(2022/10~2023/02)
Geometry of CRN dynamics
Satoshi Ambe
Universality Biol. trainee(2021/10~2022/02)
Modeling of immunological learning
Mikiya Takata
Universality Biol. trainee(2021/04~2021/08)
Statistical law of self-replication
Genta Chiba
Universality Biol. trainee(2020/10~2021/02)
Self-replicating chemical network
Shotaro Beppu
Universality Biol. trainee(2020/10~2021/02)
Self-replicating chemical network
Kaori Suwazono
Universality Biol. trainee(2020/10~2021/02)
Olfactory sensing of multiple odors
Sora Hironaka
UROP trainee(2019/04~2019/09)
Growth laws of self-replicating cells
Yushin Son
Universality Biol. trainee(2019/04~2019/09)
Network structure for perfect adaptation
Mohamed BOUBAKOUR
Internship student (2018/10~2019/03)
Statistical physics
Elysia Chou
Amgen trainee (2018/06~2018/08)
Thermodynamics of adaptation
Ryo Nakabayashi
Universality Biol. trainee(2015/10~2017/03)
Statistical analysis of collective cell motion
Shoko Nakagawa
UROP trainee (2014/10~2015/03)
Image & lineage analysis of embryogenesis
Phalgun Chowdhary Chintala
IAESTE Student (2012/08~2012/11)
Bioimage informatics
Alexander Schmidt
IAESTE Student (2011/11~2012/1)
Theoretical Biology
David Dylus
Exchange Student (2008/10~2009/10)
Polarity formation
Gisler Fabienne
IAESTE Student (2009/07~2009/08)
Bioimage informatics
Our History
